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Polymorphism of variable number tandem repeat in Mycobacterium tuberculosis strains isolated from Tianjin

Tong Xie   

  • Received:2009-12-30 Revised:2010-06-08 Published:2010-11-15 Online:2010-11-15
  • Contact: Tong Xie

Abstract: Objective: Investigating the polymorphisms of variable number tandem repeat (VNTR) in Mycobacterium tuberculosis, developing high discriminatory power of VNTR typing, especially for recognizing Beijing family. Method: 22 known VNTR loci (12 MIRU, 3ETR,6 QUB and Mtub21) were assessed among 102 Mycobacterium tuberculosis strains isolated from Tianjin. Results: The 14 VNTR loci set (MIRU-10, 20, 26,27, 31,40, QUB11b,11a,18,26 and Mtub21) optimize in this study have high discriminatory power with H=0.9963. 7 loci (QUB11b,11a,18,26,MIRU-26,31,Mtub21) were highly (H>0.3), 7 loci (QUB1895,ETR-A,MIRU-10,20,27,39,4) were moderate (0.1

Key words: Mycobacterium tuberculosis, Beijing Genotype, variable number tandem repeat, Genotyping, Molecular Epidemiology